#include <mlVesselEdge.h>

Inheritance diagram for ml::VesselEdge:

Public Member Functions
	VesselEdge (const VesselEdge &other)
	Copy constructor (creates an unconnected object, only copies properties), deprecated.
	~VesselEdge ()
	Destructor.
VesselEdge &	operator= (const VesselEdge &other)
	Assignment operator, deprecated. Use copyProperties() instead.
void	copyProperties (const VesselEdge *other)
	Copy all properties (topology information is left unchanged)
bool	operator== (const VesselEdge &other) const
bool	operator!= (const VesselEdge &other) const
Graph topology
VesselNode *	predNode ()
	Get the predecessor node of this edge.
const VesselNode *	predNode () const
VesselNode *	succNode ()
	Get the successor node of this edge.
const VesselNode *	succNode () const
void	setPred (VesselNode *node)
	Connect edge-head to node `node`.
void	setSucc (VesselNode *node)
	Connect edge-tail to node `node`.
bool	isPred (const VesselNode *node) const
	Is the `graphNode` the preceding node of the edge?
bool	isSucc (const VesselNode *node) const
	Is the `graphNode` the succeeding node of the edge?
void	switchDirection ()
	Change direction of the edge by exchanging pred. and succ. node.
void	setCycle ()
	Store dependent ids.
void	unsetCycle ()
bool	isCycle () const
Graph geometry
double	distance (Vector3 vp) const
	Get the euclidean distance between the edge and vp.
std::pair< MLdouble, size_t >	getDistanceAndNearestSkeletonIndex (const Vector3 &pos) const
Vector3	extent () const
	Get the edge's extent.
SubImageBoxd	getBoundingBox () const
	Bounding box of the edge.
void	transform (const Matrix4 &m)
	Apply a 4x4 homogeneous transformation matrix to all skeleton positions.
void	convertToVoxel (Matrix4 *mat)
	convert all skeleton coordinates
void	convertToWorld (Matrix4 *mat)
Persistence
virtual void	addStateToTree (TreeNode *parent) const
	Attaches the object state as children of the given parent node.
	ML_SET_ADDSTATE_VERSION (3)
	Set current addStateToTree() version number:
virtual void	readStateFromTree (TreeNode *parent)
	Reads the object state from the children of the given parent node.
Skeletons
Skeleton *	createSkeleton (const Vector3 &pos=Vector3(0), float minDistance=0.0f, float maxDistance=0.0f)
Skeleton *	createSkeleton (const ImageVector &pos, float minDistance=0.0f, float maxDistance=0.0f)
Skeleton *	createSkeleton (const Skeleton *skeletonTemplate)
void	removeLeadingSkeletons (size_t count)
void	removeTrailingSkeletons (size_t count)
void	removeSkeleton (size_t index)
size_t	numSkeletons (void) const
Skeleton *	skeleton (size_t index)
const Skeleton *	skeleton (size_t index) const
void	skeletonsAscending (std::vector< Skeleton * > &skeletons)
	Return copy of skeletons' addresses in ascending order (graph hierarchy)
void	skeletonsAscending (std::vector< const Skeleton * > &skeletons) const
	Return copy of skeletons' addresses in ascending order (graph hierarchy)
void	skeletonsDescending (std::vector< Skeleton * > &skeletons)
	Return copy of skeletons' addresses in descending order (graph hierarchy)
void	skeletonsDescending (std::vector< const Skeleton * > &skeletons) const
	Return copy of skeletons' addresses in descending order (graph hierarchy)
void	orderSkeletonsAscending ()
void	skeletonsAscending (std::vector< Skeleton > &skeletons) const
	Return copy of skeletons in ascending order (graph hierarchy from pred -> succ)
void	skeletonsDescending (std::vector< Skeleton > &skeletons) const
	Return copy of skeletons in descending order (graph hierarchy from succ -> pred)
bool	skeletonsAreAscending () const
	Returns if the skeletons are ordered ascending.
void	clearSkeletons ()
	Encapsulate std::vector access.
Skeleton *	frontSkeleton ()
Skeleton *	backSkeleton ()
const Skeleton *	frontSkeleton () const
const Skeleton *	backSkeleton () const
Skeleton *	skeleton (Vector3 pos, int itemType)
	Get the skeleton with minimal distance to `pos`.
const Skeleton *	skeleton (Vector3 pos, int itemType) const
	Get the skeleton with minimal distance to `pos`.
size_t	getVoxelNum () const
	Get number of edge voxels.
void	smooth (unsigned int numSmoothingPasses, float positionSmoothingFactor, float radiusSmoothingFactor, float smoothingLimit=0.0f)
	Smooths the skeletons' positions and radii.
Friends
class	EdgeAnalyser
class	Graph
class	LoadTreeData
Default Measurements
typedef double(VesselEdge::*	EdgeGetFkt )(void) const
	object bound function pointer: position of function relative to (individual) object base
typedef void(VesselEdge::*	EdgeSetFkt )(double)
	function to set float parameter value
	STATIC_GRAPH_PROPERTY (MLdouble, averageMinDistance, AverageMinDistance)
	STATIC_GRAPH_PROPERTY (MLdouble, length, Length)
	STATIC_GRAPH_PROPERTY (MLdouble, STLength, STLength)
	STATIC_GRAPH_PROPERTY (MLdouble, volume, Volume)
	STATIC_GRAPH_PROPERTY (MLdouble, STVolume, STVolume)
	STATIC_GRAPH_PROPERTY (Vector3, STBarycenter, STBarycenter)
	STATIC_GRAPH_PROPERTY (MLint, hierarchy, Hierarchy)
	STATIC_GRAPH_PROPERTY (MLint, label, Label)
	STATIC_GRAPH_PROPERTY (MLdouble, weight, Weight)
void	setSTLabel (int nLabel)
	Set label of edge and the attached subtree defined by edge directions.
void	setSTLabel (Graph *pGraph)
	Set labelof edge and the attached subtree defined by edge directions according to labels of pGraph.
bool	markST (int a_label, float r, float g, float b, float a, Vector3 pos, int snap)
	Set label and rgb color of edge and the attached subtree defined by edge directions.
bool	markEdge (int a_label, float r, float g, float b, float a, Vector3 pos, int snap)

Detailed Description

Class VesselEdge.

Definition at line 30 of file mlVesselEdge.h.

Member Typedef Documentation

typedef double(VesselEdge::* ml::VesselEdge::EdgeGetFkt)(void) const

object bound function pointer: position of function relative to (individual) object base

function to get float parameter value

Definition at line 133 of file mlVesselEdge.h.

typedef void(VesselEdge::* ml::VesselEdge::EdgeSetFkt)(double)

function to set float parameter value

Definition at line 134 of file mlVesselEdge.h.

Constructor & Destructor Documentation

ml::VesselEdge::VesselEdge ( const VesselEdge & other )

Copy constructor (creates an unconnected object, only copies properties), deprecated.

ml::VesselEdge::~VesselEdge ( )

Destructor.

Member Function Documentation

virtual void ml::VesselEdge::addStateToTree ( TreeNode * parent ) const [virtual]

Attaches the object state as children of the given parent node.

Reimplemented from ml::BaseGraphItem.

Skeleton* ml::VesselEdge::backSkeleton ( ) [inline]

Definition at line 191 of file mlVesselEdge.h.

const Skeleton* ml::VesselEdge::backSkeleton ( ) const [inline]

Definition at line 193 of file mlVesselEdge.h.

void ml::VesselEdge::clearSkeletons ( )

Encapsulate std::vector access.

void ml::VesselEdge::convertToVoxel ( Matrix4 * mat )

convert all skeleton coordinates

void ml::VesselEdge::convertToWorld ( Matrix4 * mat )

void ml::VesselEdge::copyProperties ( const VesselEdge * other )

Copy all properties (topology information is left unchanged)

Skeleton* ml::VesselEdge::createSkeleton	(	const Vector3 &	pos = `Vector3(0)`,
		float	minDistance = `0.0f`,
		float	maxDistance = `0.0f`
	)

Skeleton* ml::VesselEdge::createSkeleton	(	const ImageVector &	pos,
		float	minDistance = `0.0f`,
		float	maxDistance = `0.0f`
	)		`[inline]`

Definition at line 153 of file mlVesselEdge.h.

References createSkeleton().

Referenced by createSkeleton().

Skeleton* ml::VesselEdge::createSkeleton ( const Skeleton * skeletonTemplate )

double ml::VesselEdge::distance ( Vector3 vp ) const [inline]

Get the euclidean distance between the edge and vp.

Here: get the distance to the nearest skeleton voxel.

Definition at line 90 of file mlVesselEdge.h.

Vector3 ml::VesselEdge::extent ( ) const

Get the edge's extent.

Skeleton* ml::VesselEdge::frontSkeleton ( ) [inline]

Definition at line 190 of file mlVesselEdge.h.

const Skeleton* ml::VesselEdge::frontSkeleton ( ) const [inline]

Definition at line 192 of file mlVesselEdge.h.

SubImageBoxd ml::VesselEdge::getBoundingBox ( ) const

Bounding box of the edge.

std::pair<MLdouble, size_t> ml::VesselEdge::getDistanceAndNearestSkeletonIndex ( const Vector3 & pos ) const

size_t ml::VesselEdge::getVoxelNum ( ) const

Get number of edge voxels.

bool ml::VesselEdge::isCycle ( ) const [inline]

Definition at line 83 of file mlVesselEdge.h.

bool ml::VesselEdge::isPred ( const VesselNode * node ) const [inline]

Is the graphNode the preceding node of the edge?

Definition at line 70 of file mlVesselEdge.h.

bool ml::VesselEdge::isSucc ( const VesselNode * node ) const [inline]

Is the graphNode the succeeding node of the edge?

Definition at line 72 of file mlVesselEdge.h.

bool ml::VesselEdge::markEdge	(	int	a_label,
		float	r,
		float	g,
		float	b,
		float	a,
		Vector3	pos,
		int	snap
	)

bool ml::VesselEdge::markST	(	int	a_label,
		float	r,
		float	g,
		float	b,
		float	a,
		Vector3	pos,
		int	snap
	)

Set label and rgb color of edge and the attached subtree defined by edge directions.

Start at skeleton of this edge which is nearest to pos, while for snap = Graph::Node/Graph:Edge the nearest node skeleton or the nearest edge skeleton is used, respectively.

ml::VesselEdge::ML_SET_ADDSTATE_VERSION ( 3 )

Set current addStateToTree() version number:

size_t ml::VesselEdge::numSkeletons ( void ) const [inline]

Definition at line 160 of file mlVesselEdge.h.

bool ml::VesselEdge::operator!= ( const VesselEdge & other ) const [inline]

Definition at line 51 of file mlVesselEdge.h.

VesselEdge& ml::VesselEdge::operator= ( const VesselEdge & other )

Assignment operator, deprecated. Use copyProperties() instead.

bool ml::VesselEdge::operator== ( const VesselEdge & other ) const

void ml::VesselEdge::orderSkeletonsAscending ( )

VesselNode* ml::VesselEdge::predNode ( ) [inline]

Get the predecessor node of this edge.

Definition at line 56 of file mlVesselEdge.h.

const VesselNode* ml::VesselEdge::predNode ( ) const [inline]

Definition at line 57 of file mlVesselEdge.h.

virtual void ml::VesselEdge::readStateFromTree ( TreeNode * parent ) [virtual]

Reads the object state from the children of the given parent node.

Reimplemented from ml::BaseGraphItem.

void ml::VesselEdge::removeLeadingSkeletons ( size_t count )

void ml::VesselEdge::removeSkeleton ( size_t index )

void ml::VesselEdge::removeTrailingSkeletons ( size_t count )

void ml::VesselEdge::setCycle ( ) [inline]

Store dependent ids.

Separate circles in the graph or connections between trees.

Definition at line 81 of file mlVesselEdge.h.

void ml::VesselEdge::setPred ( VesselNode * node )

Connect edge-head to node node.

void ml::VesselEdge::setSTLabel ( int nLabel )

Set label of edge and the attached subtree defined by edge directions.

void ml::VesselEdge::setSTLabel ( Graph * pGraph )

Set labelof edge and the attached subtree defined by edge directions according to labels of pGraph.

void ml::VesselEdge::setSucc ( VesselNode * node )

Connect edge-tail to node node.

Skeleton* ml::VesselEdge::skeleton ( size_t index ) [inline]

Definition at line 161 of file mlVesselEdge.h.

const Skeleton* ml::VesselEdge::skeleton ( size_t index ) const [inline]

Definition at line 162 of file mlVesselEdge.h.

const Skeleton* ml::VesselEdge::skeleton	(	Vector3	pos,
		int	itemType
	)		const

Get the skeleton with minimal distance to pos.

If itemType = Graph::node, the nearest end-skeleton (snap to node) is returned, if itemType = Graph::edge, it is the nearest edge skeleton.

Skeleton* ml::VesselEdge::skeleton	(	Vector3	pos,
		int	itemType
	)		`[inline]`

Get the skeleton with minimal distance to pos.

If itemType = Graph::node, the nearest end-skeleton (snap to node) is returned, if itemType = Graph::edge, it is the nearest edge skeleton.

Definition at line 198 of file mlVesselEdge.h.

References skeleton().

Referenced by skeleton().

bool ml::VesselEdge::skeletonsAreAscending ( ) const

Returns if the skeletons are ordered ascending.

void ml::VesselEdge::skeletonsAscending ( std::vector< Skeleton * > & skeletons )

Return copy of skeletons' addresses in ascending order (graph hierarchy)

void ml::VesselEdge::skeletonsAscending ( std::vector< const Skeleton * > & skeletons ) const

Return copy of skeletons' addresses in ascending order (graph hierarchy)

void ml::VesselEdge::skeletonsAscending ( std::vector< Skeleton > & skeletons ) const

Return copy of skeletons in ascending order (graph hierarchy from pred -> succ)

void ml::VesselEdge::skeletonsDescending ( std::vector< const Skeleton * > & skeletons ) const

Return copy of skeletons' addresses in descending order (graph hierarchy)

void ml::VesselEdge::skeletonsDescending ( std::vector< Skeleton > & skeletons ) const

Return copy of skeletons in descending order (graph hierarchy from succ -> pred)

void ml::VesselEdge::skeletonsDescending ( std::vector< Skeleton * > & skeletons )

Return copy of skeletons' addresses in descending order (graph hierarchy)

void ml::VesselEdge::smooth	(	unsigned int	numSmoothingPasses,
		float	positionSmoothingFactor,
		float	radiusSmoothingFactor,
		float	smoothingLimit = `0.0f`
	)

Smooths the skeletons' positions and radii.

No smoothing is done if a smoothing factor is 0 (or the number of smoothing passes = 0), smoothingLimit defines the maximal allowed displacement of skeletons (relative to minimal voxel extension), smoothingLimit = 0.0 means no limit.

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		STLength	,
		STLength
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	Vector3	,
		STBarycenter	,
		STBarycenter
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		averageMinDistance	,
		AverageMinDistance
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		length	,
		Length
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		STVolume	,
		STVolume
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLint	,
		label	,
		Label
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLint	,
		hierarchy	,
		Hierarchy
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		volume	,
		Volume
	)

ml::VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		weight	,
		Weight
	)

VesselNode* ml::VesselEdge::succNode ( ) [inline]

Get the successor node of this edge.

Definition at line 60 of file mlVesselEdge.h.

const VesselNode* ml::VesselEdge::succNode ( ) const [inline]

Definition at line 61 of file mlVesselEdge.h.

void ml::VesselEdge::switchDirection ( )

Change direction of the edge by exchanging pred. and succ. node.

void ml::VesselEdge::transform ( const Matrix4 & m )

Apply a 4x4 homogeneous transformation matrix to all skeleton positions.

void ml::VesselEdge::unsetCycle ( ) [inline]

Definition at line 82 of file mlVesselEdge.h.

Friends And Related Function Documentation

friend class EdgeAnalyser [friend]

Definition at line 32 of file mlVesselEdge.h.

friend class Graph [friend]

Reimplemented from ml::BaseGraphItem.

Definition at line 33 of file mlVesselEdge.h.

friend class LoadTreeData [friend]

Reimplemented from ml::BaseGraphItem.

Definition at line 34 of file mlVesselEdge.h.

The documentation for this class was generated from the following file:

MeVisLab/Standard/Sources/ML/MLVesselGraph/mlVesselEdge.h

Public Member Functions

Friends

Default Measurements

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation